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scran.js

Single cell RNA-seq analysis in Javascript

• bioinformatics
• scRNA-seq
• single-cell
• webassembly

jkanche

published 3.0.2 • 8 days agopublished 3.0.2 8 days ago

bakana

Backend for kana's single-cell analyses. This supports single or multiple samples, execution in Node.js or the browser, in-memory caching of results for iterative analyses, and serialization to/from file for redistribution.

• bioinformatics
• single-cell
• scRNA-seq

ltla

published 3.0.1 • 8 months agopublished 3.0.1 8 months ago

bakana-remotes

Fetch remote single-cell RNA-seq datasets for input into the bakana analysis pipeline.

• bioinformatics
• single-cell
• scRNA-seq

ltla

published 2.1.0 • 4 days agopublished 2.1.0 4 days ago

valkana

Validate the output files produced by the bakana single-cell analysis pipelines.

• bioinformatics
• scRNA-seq
• single-cell
• webassembly

ltla

published 1.0.0-alpha.3 • a year agopublished 1.0.0-alpha.3 a year ago

bakana-takane

Extensions to the bakana single-cell analysis pipeline to accept takane-formatted datasets and results. This facilitates interoperability with the rest of the ArtifactDB ecosystem.

• bioinformatics
• single-cell
• scRNA-seq

ltla

published 0.1.0 • 7 days agopublished 0.1.0 7 days ago