ltla

scran.js

Single cell RNA-seq analysis in Javascript

wasmarrays.js

Wrappers around arrays allocated on the Wasm heap

bakana

Backend for kana's single-cell analyses. This supports single or multiple samples, execution in Node.js or the browser, in-memory caching of results for iterative analyses, and serialization to/from file for redistribution.

valkana

Validate the output files produced by the bakana single-cell analysis pipelines.

chihaya

Load a chihaya-formatted delayed matrix into a Javascript session

artifactdb

Javascript client for working with the ArtifactDB REST API.

bakana-remotes

Fetch remote single-cell RNA-seq datasets for input into the bakana analysis pipeline.

bioconductor

Bioconductor classes, generics and methods, implemented in Javascript.

gesel

Client-side search for gene set selections

bakana-takane

Extensions to the bakana single-cell analysis pipeline to accept takane-formatted datasets and results. This facilitates interoperability with the rest of the ArtifactDB ecosystem.