bionode-sra
A Node.js wrapper for SRA Toolkit.
Install
You need to install the latest Node.JS first, please check nodejs.org or do the following:
# Ubuntu sudo apt-get install npm# Mac brew install node# Both npm install -g nn stable
To use bionode-sra
as a command line tool, you can install it globally with -g
.
npm install bionode-sra -g
Or, if you want to use it as a JavaScript library, you need to install it in your local project folder inside the node_modules
directory by doing the same command without -g
.
npm i bionode-sra # 'i' can be used as shortcut to 'install'
Usage
If you're using bionode-sra with Node.js, you can require the module:
var sra = var fastqDump =
Please read the documentation for the methods exposed by bionode.
Command line examples
$ bionode-sra fastq-dump SRR1509835.sra$ bionode-sra fastq-dump SRR1509835.sra fastqOutputDirectory
Documentation
Check our documentation at doc.bionode.io or do:
bionode-sra --help
Contributing
We welcome all kinds of contributions at all levels of experience, please read the CONTRIBUTING.md to get started!
Communication channels
Don't be shy! Come talk to us 😃
- Email mail@bionode.io
- Chat room http://gitter.im/bionode/bionode
- IRC #bionode on Freenode
- Twitter @bionode